Package qupath.opencv.features
Class DelaunayClusteringPlugin<T>
java.lang.Object
qupath.lib.plugins.AbstractPlugin<T>
qupath.lib.plugins.AbstractInteractivePlugin<T>
qupath.opencv.features.DelaunayClusteringPlugin<T>
- Type Parameters:
T-
- All Implemented Interfaces:
PathInteractivePlugin<T>,PathPlugin<T>
Plugin for calculating Delaunay clustering, and associated features.
Warning! Because the implementation will have to change in the future, it is best not to rely on this class!
- Author:
- Pete Bankhead
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Field Summary
Fields inherited from class qupath.lib.plugins.AbstractInteractivePlugin
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected voidaddRunnableTasks(ImageData<T> imageData, PathObject parentObject, List<Runnable> tasks) For a specified parent object, generate a task to run.getDefaultParameterList(ImageData<T> imageData) This should return a default ParameterList containing any information that is needed to repeat the task exactly.Get a brief description of the plugin's purpose & operation.(Optional) short one-line description of the results, e.g.getName()Get the name of the plugin for display.protected Collection<? extends PathObject>getParentObjects(ImageData<T> imageData) Get a collection of objects to process, based on the contents of the PluginRunner.Collection<Class<? extends PathObject>>Get a collection of possible parent objects that the plugin could have.protected voidpostprocess(TaskRunner taskRunner, ImageData<T> imageData) Called immediately after running any generated tasks.protected voidpreprocess(TaskRunner taskRunner, ImageData<T> imageData) Called after parsing the argument String, and immediately before creating & running any generated tasks.Methods inherited from class qupath.lib.plugins.AbstractInteractivePlugin
alwaysPromptForObjects, getLoggableParameters, getParameterList, parseArgumentMethods inherited from class qupath.lib.plugins.AbstractPlugin
addWorkflowStep, getTasks, rearrangeByStride, requestHierarchyUpdate, runPluginMethods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitMethods inherited from interface qupath.lib.plugins.PathPlugin
runPlugin
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Constructor Details
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DelaunayClusteringPlugin
public DelaunayClusteringPlugin()Constructor.
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Method Details
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preprocess
Description copied from class:AbstractPluginCalled after parsing the argument String, and immediately before creating & running any generated tasks. Does nothing by default.- Overrides:
preprocessin classAbstractPlugin<T>
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postprocess
Description copied from class:AbstractPluginCalled immediately after running any generated tasks. Does nothing by default.- Overrides:
postprocessin classAbstractPlugin<T>
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getSupportedParentObjectClasses
Description copied from interface:PathInteractivePluginGet a collection of possible parent objects that the plugin could have. This may be used, for example, to specified that analysis may be applied to any/all TMA cores or annotations. If no parent objects are required, PathRootObject.class should be returned in the list.- Returns:
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getName
Description copied from interface:PathPluginGet the name of the plugin for display.This should be descriptive and, above all, short - as it may be used for menu item names & dialog box titles.
- Returns:
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getDescription
Description copied from interface:PathPluginGet a brief description of the plugin's purpose & operation.If no description is provided, this may return null.
- Returns:
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getLastResultsDescription
Description copied from interface:PathPlugin(Optional) short one-line description of the results, e.g. to say how many objects detected. GUIs may choose to display this on a label during interactive processing.- Returns:
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getDefaultParameterList
Description copied from class:AbstractInteractivePluginThis should return a default ParameterList containing any information that is needed to repeat the task exactly.- Specified by:
getDefaultParameterListin interfacePathInteractivePlugin<T>- Specified by:
getDefaultParameterListin classAbstractInteractivePlugin<T>- Returns:
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getParentObjects
Description copied from class:AbstractPluginGet a collection of objects to process, based on the contents of the PluginRunner. This could (for example) return the selected object, the root object, all detection objects... depending upon what the plugin does. Each object this returns will be passed to addRunnableTasks to create a task to run. In practice, this method can be overridden to return anything/nothing if getTasks is overridden instead.- Specified by:
getParentObjectsin classAbstractPlugin<T>- Returns:
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addRunnableTasks
protected void addRunnableTasks(ImageData<T> imageData, PathObject parentObject, List<Runnable> tasks) Description copied from class:AbstractPluginFor a specified parent object, generate a task to run. In practice, this method can be overridden to return anything/nothing if getTasks is overridden instead.- Specified by:
addRunnableTasksin classAbstractPlugin<T>
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